====== Morgane Pierre-Jean ======
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<wrap second colum> PhD student (UEVE) \\
Université d'Évry Val d'Essonne \\
Laboratoire de Mathématiques et Modélisation d'Évry (UMR 8071) \\
I.B.G.B.I., 23 Bd. de France, 91037 Évry Cedex \\
☎  +33 (0) 1 64 85 35 41  \\
📠: +33 1 64 85 36 01 \\
<morgane.pierrejean_NOSPAM_@genopole.cnrs.fr> remove _NOSPAM_ \\
{{:members:mpierrejean:resume2016postdoc.pdf|CV as of 2016-02}}
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===== Thesis =====
Development of statistical methods for DNA copy number analysis in cancerology.

{{:members:mpierrejean:phdmpjupsayv3.pdf|Manuscrit}}

{{:members:mpierrejean:slides.pdf|Slides}}

[[https://scholar.google.fr/citations?user=Yb2LStMAAAAJ&hl=fr|Citation Google page]]

===== Research topics =====
  * Change-point detection jointly in the DNA copy number and the allelic ratio in tumor cells by penalized regression and kernel methods. 

  * Intra-tumoral heterogeneity model by using DNA copy number data.
===== Publications =====

<btex>auth:pierre-jean</btex>

{{:members:mpierrejean:psmpgd2015.pdf|Poster SMPGD 2015}}
{{:members:mpierrejean:morgane_pierre-jean_jointseg_rr_2013.pdf|slides Rencontres R 2013}}
{{:members:mpierrejean:morgane_pierre-jean_sfds3013.pdf|slides SFDS 2013}}
{{:members:mpierrejean:morgane_pierre-jean_ssb2013.pdf|slides Groupe SSB 2013}}
{{:members:mpierrejean:morgane_pierre-jean_smgd2013.pdf|slides SMPGD 2013}}
{{:members:mpierrejean:morgane_pierre-jean_bs_sfds2012.pdf|slides journée du groupe B&S de la SFDS 2012}}


===== Internship manuscript (in French) =====
M2 : {{:intranet:documentation:pierre-jean_rapportm2.pdf|Segmentation de données génomiques en
cancérologie}}
===== Software =====
* [[https://cran.r-project.org/web/packages/jointseg/index.html|jointseg]]

The jointseg R package implements functions to quickly segment multivariate signals into piecewise constant profiles. A typical application is the joint segmentation of total DNA copy numbers and allelic ratios obtained from Single Nucleotide Polymorphism (SNP) microarrays in cancer studies. The package is available from R-forge and can be installed as follows from within R: 
<code>
install.packages("acnr")
install.packages("jointseg")
</code>

===== Teaching (in French) =====

__2015/2016__

**1ère Année ENSIIE : Statistique paramétrique**

{{:members:mpierrejean:projet.pdf|projet}}

{{:members:mpierrejean:dataproject.rdata.zip|donneesProjet}}

__2014/2015__

**M1 SGO : TP Démarche statistique 1**

**M1 SGO : TP Démarche statistique 2**

**1ère Année ENSIIE : Statistique paramétrique**


__2013/2014__

**M1 SGO : TP Démarche statistique 1**

**M1 SGO : TP Démarche statistique 2**

**L2 Info : TD Probabilité et statistique**


__2012/2013__

**École doctorale GAO : TP Bases statistiques pour la biologie**