This program is dedicated to the computation, at each position of the sequence of the probability of appearance of the word of size <word_size> who appears at this position according to a Drifting Markov Model (DMM).

-w <word size> Size of words.

-a <alphabet_file> A file describing the alphabet to use.

-s <sequences_file> A file containing sequences. One model for all sequences.

-out <basename> Basename for all ouput files.

-SpM Estimation by splines (global).

-Spl Estimation by splines (basis functions).

-SpH Estimation by splines (no basis functions).

-Poly Estimation by polynom (stochastic matrices).

-PolyM Estimation by polynom (no stochastic matrices).

[-pos <in> <out>] Compute the probabilities of the word for positions in to out.

-cf <config_file> DMM is given by the config_file.

-h Print this help.

PROBAlength -w 3 -a dna.alpha -s lambda.fa -out three -Poly -cf config.out