- Équipes
- Productions scientifiques
-
- Séminaires
Sidebar
members:adehman:welcome
Table of Contents
Alia Dehman
Doctorante (UEVE)
Université d'Évry Val d'Essonne
Laboratoire de Mathématiques et Modélisation d'Évry (UMR 8071)
I.B.G.B.I., 23 Bd. de France, 91037 Évry Cedex
☎ +33 (0) 1 64 85 35 36
📠: +33 1 64 85 36 01
Firstname.Lastname@genopole.cnrs.fr
Topic of the thesis
I am working on incorporating the linkage disequilibrium (LD) information in Genome-Wide association studies.
Research topics
- Genome-Wide Association Studies (GWAS)
- Linkage Disequilibrium (LD)
- Structured penalized regression models
Publications
2019 | |
| [1] | Adjacency-constrained hierarchical clustering of a band similarity matrix with application to Genomics. Algorithms for Molecular Biology, 14:22, BioMed Central, 2019.  |
| [2] | |
2018 | |
| [3] | Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics. In Journée Régionale de Bioinformatique et Biostatistique, Génopole Toulouse, 2018. |
2015 | |
| [4] | (Theses) |
| [5] | Performance of a blockwise approach in variable selection using linkage disequilibrium information. BMC Bioinformatics, 16:14, BioMed Central, 2015. |
2013 | |
| [6] | Incorporating linkage disequilibrium blocks in Genome-Wide Association Studies. In JOBIM proceeding 2013, ():, , 2013. |
| [7] | |
Seminars and Posters
- Statistics for Systems Biology (SSB), Evry, June 2013
Slides slides_ssb
- Software and Statistical Methods for Population Genetics (SSMPG), Aussois, 2013
Poster poster_SSMPG
- Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Toulouse, July 2013
Extended abstract ex_abs
Slides slides_jobim
- Troisièmes Rencontres R, Montpellier, June 2014 http://r2014-mtp.sciencesconf.org/38324
Software
- “Blockwise Approach using Linkage Disequilibrium information” (BALD) :
The BALD R package provides functions for the Genome-Wide Association Studies including simulation of SNPs data, constrained hierarchical clustering using Linkage Disequilibrium (LD) measures, the Gap statistic to find the optimal number of clusters, and statistical regression models for SNP selection (Univariate, Lasso, Group Lasso, Elastic-Net).
Package source : http://www.math-evry.cnrs.fr/logiciels/bald
Teaching
- L1 Bio: Analysis
- L2 Math and L2 Info: Probabilities and Statistics
A competition award
The Audience Award in the local stage of the competition “Ma thèse en 180 secondes” in Evry MT180-Evry.
Internship
M2 internship report Régression parcimonieuse structurée pour les études d’association pangénomiques
members/adehman/welcome.txt · Last modified: 2016/01/21 11:00 by adehman
Page Tools
Except where otherwise noted, content on this wiki is licensed under the following license: CC Attribution-Share Alike 3.0 Unported
